GASystemChannel
-GA10 QIIME2 Alpha多樣性分析 (coming soon)
Environment requirement
- Hardware : CPU : 10 cores
- RAM : 45 Gb
- Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) .
The diagram of workflow
Reference
Microbiome | Path | Source |
Silva138NBscikit0.24.1 | /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ | QIIME2_Data_resources |
Greengenes138NBscikit0.24.1 | /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ | QIIME2_Data_resources |
RDPtraset18scikit0.24.1 | /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ | RDP Classifier |
NCBIBioProj33175scikit0.24.1 | /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ | QIIME2_forum |
NCBIBioProj33317scikit0.24.1 | /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ | QIIME2_forum |