GA09 QIIME2 微生物群集分析

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GASystemChannel

－GA09 QIIME2 微生物群集分析(coming soon)


Environment requirement

  • Hardware :    CPU : 10 cores
  • RAM : 45 Gb
  • Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) .

The diagram of workflow



Reference

MicrobiomePathSource
Silva138NBscikit0.24.1/staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/QIIME2_Data_resources
Greengenes138NBscikit0.24.1/staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/QIIME2_Data_resources
RDPtraset18scikit0.24.1/staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/RDP Classifier
NCBIBioProj33175scikit0.24.1/staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/QIIME2_forum
NCBIBioProj33317scikit0.24.1/staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/QIIME2_forum

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