Monthly Archives: May 2022

GASystemChannel －GA11 QIIME2 Beta多樣性分析 (coming soon) Environment requirement Hardware :    CPU : 10 cores RAM : 45 Gb Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) . The diagram of workflow Reference Microbiome Path Source Silva138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources Greengenes138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources RDPtraset18scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ RDP Classifier NCBIBioProj33175scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ QIIME2_forum NCBIBioProj33317scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ QIIME2_forum

GA11 QIIME2 Beta多樣性分析

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GASystemChannel －GA13 微生物基因註解分析 (coming soon) Environment requirement Hardware :    CPU : 10 cores RAM : 45 Gb Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) . The diagram of workflow Reference Microbiome Path Source Silva138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources Greengenes138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources RDPtraset18scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ RDP Classifier NCBIBioProj33175scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ QIIME2_forum NCBIBioProj33317scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ QIIME2_forum

GA13 微生物基因註解分析

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GASystemChannel －GA10 QIIME2 Alpha多樣性分析 (coming soon) Environment requirement Hardware :    CPU : 10 cores RAM : 45 Gb Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) . The diagram of workflow Reference Microbiome Path Source Silva138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources Greengenes138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources RDPtraset18scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ RDP Classifier NCBIBioProj33175scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ QIIME2_forum NCBIBioProj33317scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ QIIME2_forum

GA10 QIIME2 Alpha多樣性分析

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GASystemChannel －GA12 QIIME2 微生物種系分析 (coming soon) Environment requirement Hardware :    CPU : 10 cores RAM : 45 Gb Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) . The diagram of workflow Reference Microbiome Path Source Silva138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources Greengenes138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources RDPtraset18scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ RDP Classifier NCBIBioProj33175scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ QIIME2_forum NCBIBioProj33317scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ QIIME2_forum

GA12 QIIME2 微生物種系分析

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GASystemChannel －GA14 基因豐度預測 (coming soon) Environment requirement Hardware :    CPU : 10 cores RAM : 45 Gb Software :The pipeline is developed based on GA System. All software used in the pipeline are included in pre-defined software environments (GA application collection ). Please install suitable environment before start the pipeline(How to do it!) . The diagram of workflow Reference Microbiome Path Source Silva138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources Greengenes138NBscikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/ QIIME2_Data_resources RDPtraset18scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/RDPclassifier/ RDP Classifier NCBIBioProj33175scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33175/ QIIME2_forum NCBIBioProj33317scikit0.24.1 /staging/reserve/GAResource/GA_bundle/Ref/Microbiome/QIIME2/v2021.8/NCBIclassifier/BioProject_33317/ QIIME2_forum

GA14 基因豐度預測

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